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I fix bugs and now it works perfectly
Add fine tuning class, dataset class, and make changes to doc string.
Remove TensorFlow and add PyTorch.
Remove redundancy.
PyTorch version of DeepLC
Cleanup and preliminary refactoring of feature extractor
- Remove ensemble-model mode (different kernel sizes). - Split of model loading to separate function. - Make dataset take peptidoforms instead of PSMs. - Get unique peptidoforms before predicting and keep inverse index for mapping back predictions to input PSM list.
…into feature/new-api
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This pull request introduces significant updates to the DeepLC project, focusing on modernizing the codebase, improving the CI workflows, and cleaning up legacy files.
Changed
predict,finetune,train, etc.)deeplcretrainerpackage.uvRemoved